This healthy apple muffins recipe is naturally gluten-free (made with oats), lightly sweetened with maple syrup, and filled with lots of fresh apple and applesauce…to make these muffins deliciously apple-y.

After making batch after batch of my healthy pumpkin muffins this fall (we’re obsessed!), I decided it was time to mix things up and create a version with my other favorite fall flavor. It’s been a muffin marathon around here while I was testing and re-testing and getting this recipe just right. But today, I’m happy to finally share this one with you.
Meet….the most delicious healthy apple muffins. ♡
These guys are just about everything I could ask for in an apple muffin. They are made with healthy, wholesome ingredients that feel like a great choice at the beginning of each day, including lots of fiber-rich oats (which we blend to make the flour) and almond milk (or your choice of milk). They’re lightly sweetened with maple syrup, plus a hint of turbinado (raw) sugar on top if you would like. They’re naturally gluten-free, dairy-free and vegetarian. And, thanks to using both applesauce and an entire fresh apple in the recipe, I’m happy to report that these muffins are super-duper-apple-y…as any good apple muffin should be.
So while fresh apples are still in season, let’s make a batch together!

Healthy Apple Muffins Ingredients:
The ingredient list for this apple muffin recipe is pretty simple. You will need:
- Old fashioned oats: Which we will blitz in the blender or food processor to make oat flour. (Or you can just purchase oat flour at the store. We have a tiny kitchen so I usually only have room for old-fashioned oats on hand in my pantry!) Note that this recipe calls for old fashioned (rolled) oats, not quick oats.
- Pumpkin pie spice: Or apple pie spice, or whatever combination of warming spices you love. Here’s my recipe for homemade pumpkin pie spice, if you would like to mix it up yourself.
- Eggs, baking soda, sea salt, coconut oil, vanilla: All of the typical muffin-y things.
- Apple: I used a Granny Smith apple, whose tartness and texture I like in these muffins. But any kind of apple will do.
- Applesauce: I just used plain, unsweetened applesauce (made with 100% apples). But any variety/flavor will do.
- Almond milk: Or your preferred kind of milk.
- Maple syrup: Plus a sprinkle of turbinado (raw) sugar on top to sweeten, if you’d like.

How To Make Apple Muffins:
To make this healthy apple muffins recipe, simply:
- Make the oat flour. Puree the oats in a blender or food processor until they reach a fine flour-like consistency.
- Mix the dry ingredients. Add in the pumpkin pie spice, baking soda and sea salt, and pulse until combined.
- Add the apple. Finely-dice your apple (I recommend about 1/4-inch cubes). Then add it into the oat mixture, with the power on your device turned off, and use a spoon to toss it briefly until the apple chunks are all evenly coated with the oat mixture. This will help them not to all sink to the bottom of your muffins. ;)
- Mix the wet ingredients. In a separate mixing bowl, whisk together the eggs, milk, applesauce, maple syrup, coconut oil and vanilla extract until evenly combined
- Combine the wet and dry ingredients. Fold the oat and apple mixture into the egg mixture, and stir until just combined. You don’t want to overmix this batter.
- Portion into baking cups and bake. Then divide the batter evenly between 12 baking cups (they will be pretty full), sprinkle a pinch of turbinado sugar on top of each cup, and bake until a toothpick inserted in the center comes out clean!
- And…enjoy! I’m convinced these muffins are best when they’re nice and hot and fresh outta the oven. But good news, they also store and freeze well! More below.

How To Store Apple Muffins:
If you have leftover muffins, feel free to either:
- Store at room temperature: In a sealed container for up to 3 days.
- Freeze: In a sealed container (or freezer bag) for up to 3 months. Then let them thaw until they reach room temperature and enjoy.

Variations:
To mix things up, feel free to add:
- Nuts or seeds: Such as pepitas, pecans, sunflower seeds, walnuts, etc. You can either sprinkle them on top of the muffins, or fold them into the batter.
- Different spices: As mentioned above, any other blend of warming spices would be delicious, such as apple pie spice or chai spice. Some candied ginger would also be delicious in this recipe.
- Grated apple: If you don’t like the little chunks of apple in your muffins, feel free to grate your apple instead.
- A maple glaze: Whisk together powdered sugar and maple syrup until they form a glaze-like consistency, and drizzle over your muffins for extra sweetness.

Enjoy, everyone!
Healthy Apple Muffins

Ingredients
- 3 cups old-fashioned oats*
- 1 tablespoon pumpkin pie spice, homemade or store-bought
- 1 1/2 teaspoons baking soda
- 3/4 teaspoon fine sea salt
- 1 medium apple, finely diced
- 2 eggs
- 2/3 cup unsweetened almond milk, plain or vanilla
- 3/4 cup unsweetened applesauce
- 1/2 cup maple syrup
- 3 tablespoons melted coconut oil (or any mild-flavored oil)
- 1 teaspoon vanilla extract
- optional: turbinado sugar for sprinkling
Instructions
- Preheat oven to 375°F. Line a 12-cup muffin pan with parchment or cupcake liners, or lightly grease with cooking spray. Set aside.
- Puree oats in a blender or food processor until they reach a fine flour-like consistency. Add in the pumpkin pie spice, baking soda and sea salt, and pulse until the mixture is evenly combined. With the power turned off, add in the diced apple. Then use a spoon to toss until the apple is completely coated in the flour mixture. Set aside.
- In a separate large mixing bowl, whisk together the eggs, milk, applesauce, maple syrup, coconut oil and vanilla extract until evenly combined. Fold the dry ingredients in with the wet ingredient mixture, and stir until the mixture is just combined. (Try to avoid over-mixing.)
- Portion the batter evenly into the prepared baking cups. Then sprinkle a generous pinch of turbinado sugar on top of each muffin, if you would like.
- Bake for 15-18 minutes, or until a toothpick inserted in the center of the muffins comes out clean. Remove from the oven and place the pan on a cooling rack for 5 minutes.
- Serve warm. Or let the muffins cool to room temperature, then store in a sealed container for up to 3 days, or freeze for up to 3 months.
Notes






Made this recipe exactly as written, no substitutions and they turned out perfectly! I love the heavy amount of spice mix, glad I didn’t hold back. My 6 year old declared these the best muffins she’s ever had!
Beautiful! Thoroughly enjoy this recipe. Thank you
I just made these, thank you for the recipe! I used mashed bananas instead of applesauce, coconut sugar instead of maple syrup, olive oil instead of coconut oil, and oat milk because that’s what I had on hand. They are very delicious!
I read the reviews before I made and I’m glad I did. I did not use muffin papers and just sprayed the tin and they came out beautifully when hot. I just flipped the pan over. I added walnuts and went heavy on the spice and used half agave and half maple syrup for the sweeter. Next time I’m gonna substitute banana for the apple. Super good!!!
Did some subsitutes as I did not have all ingredients,,put in Chai spice,,less applesauce ,,what i had 1/4 cup and cream I watered down ,,it needed to be cooked longer like 20 mins,,used the coconut oil too for greasing tins worked awesome no sticking!! they are now in my favorite list!!!
I made these and they turned out really good! I did make a few substitutions though. I used 1/2 cup brown sugar instead of maple syrup (I was out of maple syrup) and I used a tablespoon of baking powder instead of baking soda (i was also out of baking soda), although next time I would definitely use 2-2 1/2 teaspoons of baking powder if I was going to make that substitution. I also used butter instead of coconut oil. I know I made a lot of substitutions, but this recipe was very forgiving and turned out amazing. Definitely would recommend!
I forgot to rate it 5 stars!
I made one change and one mistake but the muffins still turned out pretty well. I left the vanilla extract out by mistake and substituted half the maple syrup with Swerve granulated to reduce the sugar content. I also used grated one Honeycrisp apple with the skin removed. I found that I had to bake them longer than expected- probably about 25 minutes – but I think my oven temp isn’t totally accurate. There was enough batter for 15 small muffins. They didn’t hold together too well which may be a result of my substitution. I still really enjoyed one with a nice cup of coffee though! Next time I make them I think I’ll add some chopped, toasted walnuts. Thanks for the recipe.
I should update my earlier comment. I found this muffins DID hold together once I let them sit for a number of hours. Since they seemed very moist I left them uncovered for several hours (all day). I have a blueberry muffin recipe that requires the same treatment. Once I did that they held together beautifully. Will definitely make again.
These muffins are DELICIOUS! Easy to make, and quick to disappear.
The big negative I have is on the Print option. The way it is setup it takes 3 sheets of paper. This is 2 pages too many. I try a lot of recipes I find online, but I do like to print my favourites and keep them in a binder.
These healthy apple muffins were delicious. I like the various ways the recipe can be altered and used for various occasions. I was missing the nutrients content and how many fat, carbs, sugar, and calories are in a muffin. They sure were good going down!
Very good, light sweetness. Easy to make. I use all ingredients I had on hand. I used 1% milk and 3 TBS margarine instead of coconut oil and almond. Milk. Love them! I would like to now the nutritional value as I’m doing WW and would love to know how many points. I’m posting a picture sepated.